pdf – Parerga und Paralipomena http://www.michelepasin.org/blog At the core of all well-founded belief lies belief that is unfounded - Wittgenstein Sat, 17 Jan 2015 18:21:08 +0000 en-US hourly 1 https://wordpress.org/?v=5.2.11 13825966 Notes from the Force11 annual conference http://www.michelepasin.org/blog/2015/01/17/notes-from-the-force11-annual-conference/ Sat, 17 Jan 2015 18:04:41 +0000 http://michelepasin.org/blog/?p=2604 I attended the https://www.force11.org/ conference in Oxford the last couple of days (the conference was previously called ‘Beyond the PDF’).

Force11 is a community of scholars, librarians, archivists, publishers and research funders that has arisen organically to help facilitate the change toward improved knowledge creation and sharing. Individually and collectively, we aim to bring about a change in modern scholarly communications through the effective use of information technology. [About Force 11]

Rather than the presentations, I would say that the most valuable aspect of this event are the many conversations you can have with people from different backgrounds: techies, publishers, policy makers, academics etc..

Nonetheless, here’s a (very short and biased) list of things that seemed to stand out.

  • A talk titled Who’s Sharing with Who? Acknowledgements-driven identification of resources by David Eichmann, University of Iowa. He is working on a (seemingly very effective) method for extracting contributors roles from scientific articles
  • This presentation describes my recent work in semantic analysis of the acknowledgement section of biomedical research articles, specifically the sharing of resources (instruments, reagents, model organisms, etc.) between the author articles and other non-author investigators. The resulting semantic graph complements the knowledge currently captured by research profiling systems, which primarily focus on investigators, publications and grants. My approach results in much finer-grained information, at the individual author contribution level, and the specific resources shared by external parties. The long-term goal for this work is unification with the VIVO-ISF-based CTSAsearch federated search engine, which currently contains research profiles from 60 institutions worldwide.

     

  • A talk titled Why are we so attached to attachments? Let’s ditch them and improve publishing by Kaveh Bazargan, head of River Valley Technologies. He demoed a prototype manuscript tracking system that allows editors, authors and reviewers to create new versions of the same document via an online google-doc-like system which has JATS XML in the background
  • I argue that it is precisely the ubiquitous use of attachments that has held up progress in publishing. We have the technology right now to allow the author to write online and have the file saved automatically as XML. All subsequent work on the “manuscript” (e.g. copy editing, QC, etc) can also be done online. At the end of the process the XML is automatically “rendered” to PDF, Epub, etc, and delivered to the end user, on demand. This system is quicker as there are no emails or attachments to hold it up, cheaper as there is no admin involved, and more accurate as there is only one definitive file (the XML) which is the “format of record”.

     

  • Rebecca Lawrence from F1000 presented and gave me a walk through of a new suite of tools they’re working on. That was quite impressing I must say, especially due to the variety of features they offer: tools to organize and store references, annotate and discuss articles and web pages, import them into word documents etc.. All packed within a nicely looking and user friendly application. This is due to go public beta some time in March, but you can try to get access to it sooner by signing up here.
  • Screen Shot 2015 01 17 at 18 18 18

     

  • The best poster award went to 101 Innovations in Scholarly Communication – the Changing Research Workflow. This is a project aiming to chart innovation in scholarly information and communication flows. Very inspiring and definitely worth a look.
  • Screen+Shot+2015 01 15+at+11 49 58+AM

  • Finally, I’m proud to say that the best demo award went to my own resquotes.com, a personal quotations-manager online tool which I’ve just launched a couple of weeks ago. Needless to say, it was great to get vote of confidence from this community!
  • Screen Shot 2015 01 06 at 08 48 30

     

    If you want more, it’s worth taking a look directly at the conference agenda and in particular the demo/poster session agenda. And hopefully see you next year in Portland, Oregon :-)

     

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    Editing PDF metadata on OSx (ie: having the Kindle display the right title/author with pdfs) http://www.michelepasin.org/blog/2010/10/21/editing-pdf-metadata-on-osx-ie-having-the-kindle-display-the-right-titleauthor-with-pdfs/ http://www.michelepasin.org/blog/2010/10/21/editing-pdf-metadata-on-osx-ie-having-the-kindle-display-the-right-titleauthor-with-pdfs/#comments Thu, 21 Oct 2010 10:41:27 +0000 http://www.michelepasin.org/blog/?p=984 One of the cool things you get to do with a Kindle is being able to access your pdf library on the go; however soon enough I ran into the problem of getting all the pdf files to show up with the right metadata, e.g. name, author, creator etc..

    I thought that was a simple thing to do; nope! Spent quite some time looking for the right piece of software. Here’s my experience:

    1. The False Friends

    adobe.png

    Adobe Reader. It does say only ‘reader’ but since you can see the metadata so easily, I thought Adobe would have let us edit them too. No way..

    Screen shot 2010-10-19 at 16.12.35.png

    Itunes. I didn’t know that, but yes it does open and catalogue your pdf files too. And it makes you think that you can edit some sort ‘metadata’ when you press apple+I.. however, these are just iTunes metadata. The pdf ones (which are embedded in the pdf file) won’t be touched. So iTunes is not good too.

    pdf_metadata2.png

    PDF Meta Edit. I did a bit of googling and found this free little app, but it looked like my operating system didn’t like it (fyi, I’m running Snow Leopard).

    2. The Lifesaving Friends

    Screen shot 2010-10-19 at 16.15.20.png

    PDF-Meta. A small project hosted on googleCode. It’s a simple java application, not particularly nice-looking but it does the job perfectly (and since it’s java you’ve got more chances it’ll work also on other operating systems).

    Screen shot 2010-10-21 at 10.18.58.png

    PDFInfo. Another small free app that does the job. This is OSx specific though, but it gives you control over a few more options compared to PDF-Meta.

    ==+===

    That’s all I could find online… if you know of other solutions that work on OSx, please speak up!

     

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    Offline django docs http://www.michelepasin.org/blog/2009/04/29/offline-django-docs/ http://www.michelepasin.org/blog/2009/04/29/offline-django-docs/#comments Wed, 29 Apr 2009 12:52:47 +0000 http://magicrebirth.wordpress.com/?p=122 An offline copy of the django docs can be quite helpful if you find yourself doing development work without an internet connection. Obviously, django comes with its docs that you can generate (provided you have Sphinx and build tools). However sometimes a pdf is the handiest solution… here’re some useful links I found:

    Docs in CHM and PDF formats: http://charupload.wordpress.com/2007/12/02/django-documentation-chm/

    Docs as a django application: http://smileychris.tactful.co.nz/ramblings/django-documentation/ (see the screenshot below)

    picture-2

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